Do not make the change (unless IB has changed its message). The IB message to people asking for support was that we currently support java 1.5.0 so get 1.5.0_11 but until IB declare support for 1.6 you'd be better running TWS on 1.5
I would second that. I'm using TWS 870.2 and I tried Java 1.6.0_01. Stop orders placed in BookTrader did not trigger correctly (I was using a double bid/ask trigger). It happened twice, and then I switched back to 1.5.0_11.